2013

Bielewicz D, Kalak M, Kalyna M, Windels D, Barta A, Vazquez F*, Szweykowska-Kulinska Z*, Jarmolowski A*. 2013. Introns in plant pri-miRNAs stimulate miRNA biogenesis. EMBO Reports (in press)

Meyer JB,Song-Wilson Y, Foetzki A, Luginbuhl C, Winzeler M, Kneubuhler Y, Matasci C, Mascher-Frutschi F, Kalinina O, Boller T, Keel C, Maurhofer M. 2013. Does Wheat Genetically Modified for Disease Resistance Affect Root-Colonizing Pseudomonads and Arbuscular Mycorrhizal Fungi? PLoS ONE

Müller K, Levesque-Tremblay G, Bartels S, Weitbrecht K, Wormit A, Usadel B, Haughn G, Kermode AR. 2013. Demethylesterification of Cell Wall Pectins in Arabidopsis Plays a Role in Seed Germination. Plant Physiology 161: 305-316

Vazquez F and Amari K. 2013. Modification du profil des microRNAs de plantes par le Virus de la Mosaïque du Tabac. Virologie 17(2):88-95.

Vazquez F, Hohn T. 2013. Biogenesis and Biological Activity of Secondary siRNAs in Plants. Scientifica 2013, Article ID 783253

2012

Albrecht C, Boutrot F, Segonzac C, Schwessinger B, Gimenez-Ibanez S, Chinchilla D, Rathjen JP, de Vries SC, Zipfel C. 2012. Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences USA 109: 303-308.

Amari K, Vazquez F, Heinlein M. 2012. Manipulation of Plant Host Susceptibility: an Emerging Role for Viral Movement Proteins? Frontiers in Plant Science 3:1-7.

Aregger M, Borah B, Seguin J, Rajeswaran R, Gubaeva E, Zvereva A, Windels D, Vazquez F, Blevins T, Farinelli L, Pooggin M. 2012. Primary and Secondary siRNAs in Geminivirus-induced Gene Silencing. PLoS Pathogens, 8: e1002941.

Blum M, Gamper HA, Waldner M, Sierotzki H, Gisi U.2012. The cellulose synthase 3 (CesA3) gene of oomycetes: structure, phylogeny and influence on sensitivity to carboxylic acid amide (CAA) fungicides. Fungal Biology 116:529-542.

Boller T. 2012. Experimental evidence of a role for RLKs in innate immunity. In: Receptor-like kinases in plants, F. Tax and B. Kemmerling, eds., pp. 67-78. Heidelberg: Springer.

Boller T, Flury P. 2012. Peptides as danger signals: MAMPs and DAMPs. In: Plant signaling peptides, C. Gehring und H. Irving, eds., pp. 163-181. Heidelberg: Springer.

Bucher E, Reinders J, Mirouze M. 2012. Epigenetic control of transposon transcription and mobility in Arabidopsis. Current Opinion in Plant Biology 15:503-510.

Chinchilla D, Boller T. 2012. Innate immunity: pattern recognition in plants. In: Effectors in plant-microbe interactions, F. Martin and S. Kamoun, eds., pp. 3-32. Chichester: Wiley-Blackwell.

Couillerot JP, Windels D, Vazquez F, Michalski JC, Hilbert JL, Blervacq AS. 2012. Pre-treatments, conditioned medium and co-culture increase the incidence of somatic embryogenesis of different Cichorium species. Plant Signaling and Behavior 7:1-11.

Hann D, Boller T. 2012. Microbial effectors and their role in plant defense suppression. In: Effectors in plant-microbe interactions, F. Martin and S. Kamoun, eds., pp. 33-52. Chichester: Wiley-Blackwell.

Kruszka K, Pieczynski M, Windels D, Bielewicz D, Jarmolowski A, Szweykowska-Kulinska Z, Vazquez F. 2012. Role of microRNAs and Other sRNAs of Plants in their Changing Environments. Journal of Plant Physiology 169:1664-1672.

Lopez-Gomez M, Sandal N, Stougaard J, Boller T. 2012. Interplay of flg22-induced defence responses and nodulation in Lotus japonicus. Journal of Experimental Botany 63:393-401.

Lux J, Peña EJ, Bolze F, Heinlein M, Nicoud JF. 2012. Malachite Green Derivatives for Two-Photon RNA Detection. Chembiochem 13:1206-1213.

Mathimaran N, Srivastava R, Wiemken A, Sharma AK, Boller T. 2012. Genome sequences of two plant growth-promoting fluorescent Pseudomonas strains, R62 and R81. Journal of Bacteriology 194:3272-3273.

Mirouze M, Lieberman-Lazarovich M, Aversano R, Bucher E, Nicolet J, Reinders J, Paszkowski J. 2012. Loss of DNA methylation affects the recombination landscape in Arabidopsis. Proceedings of the National Academy of Sciences of USA 109:5880-5885.

Mueller K, Bittel P, Chinchilla D, Jehle AK, Albert M, Boller T, Felix G. 2012. Chimeric FLS2 receptors reveal the basis for differential flagellin perception in Arabidopsis and tomato. Plant Cell 24:2213-2224.

Mueller K, Chinchilla D, Albert M, Jehle AK, Kalbacher H, Boller T, Felix G. 2012. Contamination Risks in Work with Synthetic Peptides: flg22 as an Example of a Pirate in Commercial Peptide Preparations. Plant Cell 24:3193-3197.

Niehl A, Amari K, Gereige D, Brandner K, Mély Y, Heinlein M. 2012. Control of Tobacco Mosaic Virus Movement Protein Fate by CELL-DIVISION-CYCLE Protein 48 (CDC48). Plant Physiol. 160: 2093-2108.

Pellegrino E, Turrini A, Gamper HA, Cafa G, Bonari E, Young JPW, Giovannetti M. 2012. Establishment, persistence and effectiveness of arbuscular mycorrhizal fungal inoculants in the field revealed using molecular genetic tracing and measurement of yield components. New Phytologist 194:810-822.

Pena EJ, Heinlein M. 2012. RNA transport during TMV cell-to-cell movement. Frontiers in Plant Science 3:193.

Peña EJ, Luna GR, Zaneck MC, Borniego, MB, Reyes CA, Heinlein M, Garcia ML. 2012. Citrus psorosis and Mirafiori lettuce big-vein ophiovirus proteins localize to the cytoplasm and self interact in vivo. Virus Research 170:34-43.

Peña E, Niehl A, Heinlein M. 2012. Viral studies point the way: mechanisms of intercellular transport. In: Short and Long Distance Signaling, Kragler F, Hülskamp M, eds, pp 1-43. New York: Springer

Pooggin MM, Rajeswaran R, Schepetilnikov MV, Ryabova LA, 2012. Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause rice tungro disease. PLoS Pathogens 8: e1002568.

Rajeswaran R, Aregger M, Zvereva AS, Borah BK, Gubaeva EG, Pooggin MM. 2012. Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis. Nucleic Acids Research 40: 6241-6254.

Rajeswaran R, Pooggin MM. 2012. Role of virus-derived small RNAs in plant antiviral defense: insights from DNA viruses. In: MicroRNAs in Plant development and Stress Response, R. Sunkar, ed., pp. 261-289 Springer: Berlin Heidelberg),

Rajeswaran R, Pooggin MM. 2012. RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA. Nucleic Acids Research 40: 594-599.

Ranf S, Grimmer J, Poeschl Y, Pecher P, Chinchilla D, Scheel D, Lee J. 2012. Defense-related calcium signaling mutants uncovered via a quantitative high-throughput screen in Arabidopsis thaliana. Molecular Plant 5: 115-130.

Singh P, Kuo Y-C, Mishra S, Tsai C-H, Chien C-C, Chen C-W, Desclos-Theveniau M, Chu P-W, Schulze B, Chinchilla D, Boller T, Zimmerli L. 2012. The lectin receptor kinase-VI.2 is required for priming and positively regulates Arabidopsis pattern-triggered immunity. Plant Cell 24: 1256-1270.

Sun W, Cao Y, Labby KJ, Bittel P, Boller T, Bent AF. 2012. Probing the Arabidopsis flagellin receptor: FLS2-FLS2 association and the contributions of specific domains to signaling function. Plant Cell 24: 1096-1113.

Sykorova Z, Boerstler B, Zvolenska S, Fehrer J, Gryndler M, Vosatka M, Redecker D. 2012. Long-term tracing of Rhizophagus irregularis isolate BEG140 inoculated on Phalaris arundinacea in a coal mine spoil bank, using mitochondrial large subunit rDNA markers. Mycorrhiza 22: 69-80.

Walder F, Niemann H, Mathimaran N, Lehmann MF, Boller T, Wiemken A. 2012. Mycorrhizal networks: common goods of plants shared under unequal terms of trade. Plant Physiology 159:789-797.

Xin D-W, Liao S, Xie Z-P, Hann DR, Steinle L, Boller T, Staehelin C. 2012. Functional analysis of NopM, a novel E3 ubiquitin ligase (NEL) domain effector of Rhizobium sp Strain NGR234. PLoS Pathogens 8:e1002707.

2011

Al-Yahya'ei MN, Oehl F, Vallino M, Lumini E, Redecker D, Wiemken A, Bonfante P. 2011. Unique arbuscular mycorrhizal fungal communities uncovered in date palm plantations and surrounding desert habitats of Southern Arabia. Mycorrhiza 21:195-209.

Anderson JC, Bartels S, Besteiro MAG, Shahollari B, Ulm R, Peck SC. 2011. Arabidopsis MAP kinase phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria. Plant Journal 67: 258-268.

Besteiro MAG, Bartels S, Albert A, Ulm R. 2011. Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway. Plant Journal 68: 727-737.

Blevins T, Rajeswaran R, Aregger M, Borah BK, Schepetilnikov M, Baerlocher L, Farinelli L, Meins F Jr, Hohn T, Pooggin MM. 2011. Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense. Nucleic Acids Research 39:5003-5014.

Blom D, Fabbri C, Connor EC, Schiestl FP, Klauser DR, Boller T, Eberl E and Weisskopf L 2011 Production of plant growth-modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environmental Microbiology 13:3047-3058.

Courty PE, Labbe J, Kohler A, Marçais B, Bastien C, Churin JL, Garbaye J, Le Tacon F, 2011. Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots. Journal of Experimental Botany 62:249-260.

Courty PE, Walder F, Boller T, Ineichen K, Wiemken A, Rousteau A, Selosse MA. 2011. Carbon and nitrogen metabolism in mycorrhizal networks and mycoheterotrophic plants of tropical forests: a stable isotope analysis.
Plant Physiology 156:952-961.

Foetzki A, Winzeler M, Boller T, Felber F, Gruissem W, Keel C, Keller B, Mascher F, Maurhofer M, Nentwig W, Romeis J, Sautter C, Schmid B, Bigler, F. 2011. Field trials with genetically modified powdery mildew-resistant wheat. Agrarforschung Schweiz 2, 446-453.

Hohn T and Vazquez F. 2011. RNA Silencing Pathways of Plants: Silencing and its Suppression by Plant DNA Viruses. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms 1809:588-600.

Hu Q, Hollunder J, Niehl A, Kørner CJ, Gereige D, Windels D, Arnold A, Kuiper M, Vazquez F, Pooggin M and Heinlein M. 2011. Specific Impact of Tobamovirus Infection on the Arabidopsis Small RNA Profile. PLoS ONE 6:e19549.

Kuramae E, Gamper H, van Veen J, Kowalchuk G. 2011. Soil and plant factors driving the community of soil-borne microorganisms across chronosequences of secondary succession of chalk grasslands with a neutral pH. FEMS Microbiology Ecology 77: 285-294.

Lasseur B, Lothier J, Wiemken A, Van Laere A, Morvan-Bertrand A, Van den Ende W, Prud'homme M. 2011. Towards a better understanding of the generation of fructan structure diversity in plants: molecular and functional characterization of a sucrose:fructan 6-fructosyltransferase (6-SFT) cDNA from perennial ryegrass (Lolium perenne). Journal of Experimental Botany 62:1871-85.

Loth-Pereda V, Orsini E, Courty PE, Lota F, Kohler A, Diss L, Blaudez D, Chalot M, Nehls U, Bucher M, Martin F. 2011. Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiology 156 :2141-2154.

Mäder P, Kaiser F, Adholeya A, Singh R, Uppal H, Sharma A, Srivastava R, Sahai V, Aragno M, Wiemken A, Johri B, Fried P. 2011. Inoculation of root microorganisms for sustainable wheat-rice and wheat-black gram rotations in India. Soil Biology and Biochemistry 43:609-619.

Oehl F, Schneider D, Sieverding E, Burga CA. 2011. Succession of arbuscular mycorrhizal communities in the foreland of the retreating Morteratsch glacier in the Central Alps. Pedobiologia 54:321-331.

Oehl F, Sieverding E, Palenzuela J, Ineichen K, Alves da Silva G. 2011. Advances in Glomeromycota taxonomy and classification. IMA Fungus 2:191-199

Pritsch K, Courty PE, Churin JL, Cloutier-Hurteau B, Ali MA, Damon C, Duchemin M, Egli S, Ernst J, Fraissinet-Tachet L, Kuhar F, Legname E, Marmeisse R, Muller A, Nikolova P, Peter M, Plassard C, Richard F, Scholter M, Selosse MA, Garbaye J. 2011. Optimized assay and storage conditions for enzymatic activity profiling of ectomycorrhizae. Mycorrhiza 21:589-600.

Rineau F, Courty PE. 2011. Secreted enzymatic activities of ectomycorrhizal fungi as a case study of functional diversity and functional redundancy. Annals of Forest Sciences 68: 69-80.

Roux M, Schwessinger B, Albrecht C, Chinchilla D, Jones A, Holton N, Malinovsky FG, Toer M, de Vries S, Zipfel C. 2011. The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens. Plant Cell 23:2440-2455.

Sablok G, Gupta PK, Baek JM, Vazquez F, Min XJ. 2011. Genome-wide survey of alternative splicing in the grass Brachypodium distachyon - a emerging model biosystem for plant functional genomics. Biotechnology Letters 33:329-336.

Sablok G, Nayak KC, Gupta PK, Vazquez F and Tatarinova TV. 2011. Synonymous codon usage, GC(3) and evolutionary patterns across plastomes of three pooid model species: Emerging grass genome models for monocots. Molecular Biotechnology 49:116 -128.

Ségonzac C, Feike D, Gimenez-Ibanez S, Hann DR, Zipfel C, Rathjen JP (2011) Hierarchy and roles of pathogen-associated molecula pattern-induced responses in Nicotiana benthamiana. Plant Physiology 156: 687-699.

Si-Ammour A, Windels D, Arn-Bouldoires E, Kuter C, Ailhas J, Meins F Jr, Vazquez F. 2011. MiR393 and secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves. Plant Physiology 157:683-691.

Sýkorová Z, Börstler B, Zvolenská S, Fehrer J, Gryndler M, Vosátka M, Redecker D, 2011. Long-term tracing of Rhizophagus irregularis isolate BEG140 inoculated on Phalaris arundinacea in a coalmine spoil bank, using mitochondrial large subunit rDNA markers. Mycorrhiza 22:69-80

Weiss M, Sykorová Z, Garnica S, Riess K, Martos F, Krause C, Oberwinkler F, Bauer R, Redecker D, 2011. Sebacinales everywhere: previously overlooked ubiquitous fungal endophytes of plants. PLoS ONE 6: e16793.

Windels D. and Vazquez F. 2011. miR393: Integrator of environmental cues in auxin signaling? Plant Signaling and Behavior 6:121-131.

2010

Amari K, Boutant E, Hofmann C, Schmitt-Keichinger C, Fernandez-Calvino L, Didier P, Lerich A, Mutterer J, Thomas CL, Heinlein M, Mely Y, Maule AJ, Ritzenthaler C. 2010. A family of plasmodesmal proteins with receptor-like properties for plant viral movement proteins. PLoS Pathogens 6:e1001119.

Bartels S, Besteiro MAG, Lang D, Ulm R. 2010. Emerging functions for plant MAP kinase phosphatases. Trends in Plant Science 15:322-329.

Blackburn RK, Mbeunkui F, Mitra SK, Mentzel T, Goshe MB. 2010. Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation. J. Proteome Res. 9:3621-37.

Blum M, Waldner M, Gisi U. 2010. A single point mutation in the novel PvCesA3 gene confers resistance to the carboxylic acid amide fungicide mandipropamid in Plasmopara viticola. Fungal Genetics and Biology 47:499-510.

Börstler B, Thiéry O, Sýkorová Z, Berner A, Redecker D. 2010. Diversity of mitochondrial large subunit rDNA haplotypes of Glomus intraradices in two agricultural field experiments and two semi-natural grasslands. Molecular Ecology 19:1497-1511.

Boutant E, Didier P, Niehl A, Mely Y, Ritzenthaler C, Heinlein M. 2010. Fluorescent protein recruitment assay for demonstration and analysis of in vivo protein interactions in plant cells and its application to Tobacco mosaic virus movement protein. Plant Journal 62:171-177.

Chellappan P, Xia J, Zhou XF, Gao S, Zhang XM, Coutino G, Vazquez F, Zhang WX, Jin HL. 2010. siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Research 38:6883-6894.

Courty PE, Buée M, Diedhiou AG, Frey-Klett P, Le Tacon F, Rineau F, Turpault MP, Uroz S, Garbaye J. 2010. The role of ectomycorrhizal communities in forest ecosystem processes: New perspectives and emerging concepts. Soil Biology & Biochemistry 42:679-698.

Courty PE, Franc A, Garbaye J. 2010. Temporal and functional pattern of secreted enzyme activities in an ectomycorrhizal community. Soil Biology & Biochemistry 42:2022-2025.

Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HT, Bodelier PL, Whiteley AS, van Veen JA, Kowalchuk GA. 2010. Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO₂. Proc. Natl. Acad. Sci. USA. 107:10938-42.

Feddermann N, Finlay N, Boller T, Elfstrand M. 2010. Functional diversity in arbuscular mycorrhiza - the role of gene expression, phosphorous nutrition and symbiotic efficiency. Fungal Ecology 3:1-8.

Gamper HA, van der Heijden MG, Kowalchuk GA. 2010. Molecular trait indicators: moving beyond phylogeny in arbuscular mycorrhizal ecology. New Phytology 185:67-82.

Gimenez-Ibanez S, Hann DR, Rathjen JP. 2010. Deciphering the mode of action and host recognition of bacterial type III effectors. Functional Plant Biology 37:926-932.

Häweker H, Rips S, Koiwa H, Salomon S, Saijo Y, Chinchilla D, Robatzek S, von Schaewen A. 2010. Pattern recognition receptors require N-glycosylation to mediate plant immunity. Journal of Biological Chemistry 285:4629-36.

Hann DR, Gimenez-Ibanez S, Rathjen JP. 2010. Bacterial virulence effectors and their activities. Current Opinion in Plant Biology 13:388-393.

Hann DR, Rathjen JP. 2010. The long and winding road: virulence effector proteins of plant pathogenic bacteria. Cellular and Molecular Life Sciences 67:3425-3434.

Hildermann I, Messmer M, Dubois D, Boller T, Wiemken A, Mäder P. 2010. Nutrient use efficiency and arbuscular mycorrhizal root colonisation of winter wheat cultivars in different farming systems of the DOK long-term trial. Journal of the Science of Food and Agriculture 90:2027-38.

Jeworutzki E, Roelfsema MR, Anschütz U, Krol E, Elzenga JT, Felix G, Boller T, Hedrich R, Becker D. 2010. Early signaling through the Arabidopsis pattern recognition receptors FLS2 and EFR involves Ca²⁺-associated opening of plasma membrane anion channels. Plant Journal 62:367–378.

Krauss M, Berner A, Burger D, Wiemken A, Niggli U, Mäder P. 2010. Reduced tillage in temperate organic farming: implications for crop management and forage production. Soil Use Management 26:12–20.

Krol E, Mentzel T, Chinchilla D, Boller T, Felix G, Kemmerling B, Postel S, Arents M, Jeworutzki E, Al-Rasheid KAS, Becker D, Hedrich R. 2010. Perception of the Arabidopsis danger signal peptide 1 involves the pattern recognition receptor AtPEPR1 and its close homologue AtPEPR2. Journal of Biological Chemistry 285:13471-13479.

Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie EL, DeSantis TZ, Andersen GL, van Veen JA, Kowalchuk GA. 2010. Microbial secondary succession in a chronosequence of chalk grasslands. ISME Journal 4:711-715.

Schulze B, Mentzel T, Jehle AK, Mueller K, Boller T, Felix G, Chinchilla D. 2010. Rapid heteromerization and phosphorylation of ligand-activated plant transmembrane receptors and their associated kinase BAK1. Journal of Biological Chemistry 285:9444-9451.

Stracke R, Favory JJ, Gruber H, Bartelniewoehner L, Bartels S, Binkert M, Funk M, Weisshaar B, Ulm R. 2010. The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation. Plant Cell and Environment 33:88-103.

Tchabi A, Coyne D, Hountondji F, Lawouin L, Wiemken A, Oehl F. 2010. Efficacy of indigenous arbuscular mycorrhizal fungi for promoting white yam (Dioscorea rotundata) growth in West Africa. Applied Soil Ecology 45:92-100.

Thiéry O, Börstler B, Ineichen K, RedeckerD. 2010. Evolutionary dynamics of introns and homing endonuclease ORFs in a region of the large subunit of the mitochondrial rRNA in Glomus species (arbuscular mycorrhizal fungi, Glomeromycota). Molecular Phylogenetics and Evolution 55:599-610.

van de Voorde TF, van der Putten WH, Gamper HA, Gera Hol WH, Bezemer TM. 2010. Comparing arbuscular mycorrhizal communities of individual plants in a grassland biodiversity experiment. New Phytologist 186:746-754.

Vazquez F, Legrand S, Windels D. 2010. The biosynthetic pathways and biological scopes of plant small RNAs. Trends in Plant Science 15:337-345.

Verbruggen E, Röling WF, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MG. 2010. Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytologist 186:968-979.

Yamamoto S, Lüscher M, Hochstrasser U, Boller T, Wiemken A. 2010. Mode of synthesis of long-chain fructan in timothy haplocorm. Grassland Science 56:194-197.

2009

Altenbach D, Rudino-Pinera E, Olvera C, Boller T, Wiemken A, Ritsema T. 2009. An acceptor-substrate binding site determining glycosyl transfer emerges from mutant analysis of a plant vacuolar invertase and a fructosyltransferase. Plant Molecular Biology 69:47-56.

Aslam SN, Erbs G, Morrissey KL, Newman MA, Chinchilla D, Boller T, Molinaro A, Jackson RW, Cooper RM. 2009. Microbe-associated molecular pattern (MAMP) signatures, synergy, size and charge: influences on perception or mobility and host defence responses. Mol.ecular Plant Pathology 10:375-87.

Blaszkowski J, Ryszka P, Oehl F, Koegel S, Wiemken A, Kovács GM, Redecker D. 2009. Glomus achrum and G. bistratum, two new species of arbuscular mycorrhizal fungi (Glomeromycota) found in maritime sand dunes. Botany 87, 260-271.

Boller T, Felix G. 2009. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology 60:379-406.

Boller T, He SY. 2009. Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens. Science 324:742-744.

Chinchilla D, Shan L, He P, de Vries S, Kemmerling B. 2009. One for all: the receptor-associated kinase BAK1. Trends inPlant Sciences 14:535-41.

Courty PE, Hoegger PJ, Kilaru S, Kohler A , Buee M, Garbaye J, Martin F, Kues U. 2009. Phylogenetic analysis, genomic organization, and expression analysis of multi-copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor. New Phytologist 182:736-750.

Cullings K, Courty PE. 2009. Saprotrophic capabilities as functional traits to study functional diversity and resilience of ectomycorrhizal community. Oecologia 161:661-664.

Dwivedi D, Johri BN, Ineichen K, Wray V, Wiemken A. 2009. Impact of antifungals producing rhizobacteria on the performance of Vigna radiata in the presence of arbuscular mycorrhizal fungi. Mycorrhiza 19:559-570.

Esfandiari N, Kohi-Habibi M, Hohn T, Pooggin MM. 2009. Complete genome sequence of an Iranian isolate of Potato virus X from the legume plant Pisum sativum. Virus Genes 39:141-145.

Hildermann I, Thommen A, Dubois D, Boller T, Wiemken A, Mader P. 2009. Yield and baking quality of winter wheat cultivars in different farming systems of the DOK long-term trials. Journal of the Science of Food and Agriculture 89:2477-91.

Li J, Zhao-Hui C, Batoux M, Nekrasov V, Roux M, Chinchilla D, Zipfel C, Jones JD. 2009. Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR. Proceedings of the National Academy of Sciencies USA 106:15973-78.

Lu X, Tintor N, Mentzel T, Kombrink E, Boller T, Robatzek S, Schulze-Lefert P, Saijo Y. 2009. Uncoupling of sustained MAMP receptor signaling from early outputs in an Arabidopsis endoplasmic reticulum glucosidase II allele.Proceedings of the National Academy of Sciencies USA.106:22522-27.

Martinez-Noël GMA, Tognetti JA, Salerno GL, Wiemken A, Pontis HG. 2009.Protein phosphatase activity and sucrose-mediated induction of fructan synthesis in wheat. Planta 230:1071-79.

Nekrasov V, Li J, Batoux M, Roux M, Chu ZH, Lacombe S, Rougon A, Bittel P, Kiss-Papp M, Chinchilla D, van Esse HP, Jorda L, Schwessinger B, Nicaise V, Thomma BP, Molina A, Jones JD, Zipfel C. 2009. Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. EMBO Journal 28:3428-38.

Oehl F, Sieverding E, Ineichen K, Mader P, Wiemken , Boller T. 2009. Distinct sporulation dynamics of arbuscular mycorrhizal fungal communities from different agroecosystems in long-term microcosms. Agriculture Ecosystems Environment 134: 257-268.

Ritsema T, Brodmann D, Diks SH, Bos, CL, Nagaraj V, Pieterse, CMJ, Boller T, Wiemken A, Peppelenbosch, MP. 2009. Are small GTPases signal hubs in sugar-mediated induction of fructan biosynthesis? PLoS One 4: e6605.

Staginnus C, Iskra-Caruana ML, Lockhart B, Hohn T, Richert-Poggeler KR. 2009. Suggestions for a nomenclature of endogenous pararetroviral sequences in plants. Archives of Virology 154:1189-1193.

Tchabi, A., Burger, S., Coyne, D., Hountondiji, F., Lawouin, L., Wiemken, A., Oehl, F. 2009. Promiscuous arbuscular mycorrhizal symbiosis of yam (Dioscorea spp.), a key staple crop in West Africa. Mycorrhiza 19:375-92.

Thiebeauld O, Schepetilnikov M, Park HS, Geldreich A, Kobayashi K, Keller M, Hohn T, Ryabova LA. 2009. A new plant protein interacts with eIF3 and 60S to enhance virus-activated translation re-initiation. EMBO Journal 28:3171-3184.

2008

Appoloni S, Lekberg Y, Tercek MT, Zabinski CA, Redecker D. 2008. Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soils in Yellowstone National Park (USA). Microbial Ecology 56:649-559 (cover picture January 2009)

Börstler B, Raab PA, Thiéry O, Morton JB, Redecker D. 2008. Genetic diversity of the arbuscular mycorrhizal fungus Glomus intraradices as determined by mitochondrial large subunit rRNA gene sequences is considerably higher than previously expected. New Phytologist 180:452-465.

Croll D, Wille D, Gamper HA, Mathimaran N, Lammers PJ, Corradi N, Sanders IR. 2008. Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices. New Phytologist 178:672-687.

da Silva DKA, Freitas, Cuenca, Maia LC, Oehl F. 2008. Scutellospora pernambucana, a new fungal species in the Glomeromycetes with a diagnostic germination orb. Mycotaxon 106:361-370.

Deb Roy S, Saxena M, Bhomkar PS, Pooggin M, Hohn T, Bhalla-Sarin N. 2008. Generation of marker free salt tolerant transgenic plants of Arabidopsis thaliana using the gly I gene and cre gene under inducible promoters. Plant Cell Tissue Organ Culture 95:1-14.

Feddermann N, Boller T, Salzer P, Elfstrand S, Wiemken A, Elfstrand M. 2008. Medicago truncatula shows distinct patterns of mycorrhiza-related gene expression after inoculation with three different arbuscular mycorrhizal fungi. Planta 227:671-680.

Göhre V, Spallek T, Häweker H, Mersmann S, Mentzel T, Boller T, de Torres M, Mansfield JW, Robatzek S. 2008. Plant pattern-recognition receptor FLS2 Is directed for degradation by the bacterial Ubiquitin ligase AvrPtoB. Current Biology 18:1824 -1832.

Goto BT, Maia LC, Oehl F. 2008. Ambispora brasiliensis, a new ornamented species in the arbuscular mycorrhiza-forming Glomeromycetes. Mycotaxon 105:11-18.

Mathimaran N, Falquet L, Ineichen K, Picard C, Redecker D, Boller T, Wiemken A. 2008. Microsatellites for disentangling underground networks: Strain-specific identification of Glomus intraradices, an arbuscular mycorrhizal fungus. Fungal Genetics and Biology 45:812-817.

Mathimaran N, Falquet L, Ineichen K, Picard C, Redecker D, Wiemken A, Boller T. 2008. Unexpected vagaries of microsatellite loci in Glomus intraradices: length polymorphisms are rarely caused by variation in repeat number only. New Phytologist 180:568-570.

Merkouropoulos, G, Andreasson, E, Hess, D, Boller, T, Peck, SC. 2008. An Arabidopsis protein phosphorylated in response to microbial elicitation, AtPHOS32, is a substrate of MAP kinases 3 and 6. Journal of Biological Chemistry 283:10493-10499.

Oehl F, de Souza FA, Sieverding E. 2008. Revision of Scutellospora and description of five new genera and three new families in the arbuscular mycorrhiza-forming Glomeromycetes. Mycotaxon 106:311-360.

Palenzuela J, Ferrol N, Boller T, Azcón-Aguilar C, Oehl F. 2008. Otospora bareai, a new fungal species in the Glomeromycetes from a dolomitic shrub land in Sierra de Baza National Park (Granada, Spain). Mycologia 100:296-305.

Pooggin MM, Futterer J, Hohn T. 2008. Cross-species functionality of pararetroviral elements driving ribosome shunting. PLoS ONE 3: e1650.

Roy SD, Saxena M, Bhomkar PS, Pooggin M, Hohn T, Bhalla-Sarin N. 2008. Generation of marker free salt tolerant transgenic plants of Arabidopsis thaliana using the gly I gene and cre gene under inducible promoters. Plant Cell Tissue Organ Culture 95:1-11.

Shivaprasad PV, Rajeswaran R, Blevins T, Schoelz J, Meins F Jr, Hohn T, Pooggin MM. 2008. The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acid Research 36:5896-5909.

Tchabi A, Coyne D, Hountondji F, Lawouin L, Wiemken A, Oehl F. 2008. Arbuscular mycorrhizal fungal communities in sub-Saharan Savannas of Benin, West Africa, as affected by agricultural land use intensity and ecological zone. Mycorrhiza 18:191-195.

Van Riet L, Altenbach D, Vergauwen R, Clerens S, Kawakami A, Yoshida M, Van den Ende W, Wiemken A, Van Laere A. 2008. Purification, cloning and functional differences of a third fructan 1-exohydrolase (1-FEHw3) from wheat (Triticum aestivum). Physiologia Plantarum 133:242-253.

Vazquez F , Blevins T, Ailhas J, Boller T, Meins F. Jr. 2008. Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acid Research 36:6429-38.

Vogler H, Kwon MO, Dang V, Sambade A, Fasler M, Ashby J, Heinlein M. 2008. Tobacco mosaic virus movement protein enhances the spread of RNA silencing. PLoS Pathogens 4:e1000038.

2007

Bashan Y, Khaosaad T, Salazar BG, Ocampo JA, Wiemken A, Oehl F, Vierheilig H. 2007. Mycorrhizal characterization of the boojum tree, Fouquieria columnaris, an endemic ancient tree from the Baja California Peninsula, Mexico. Trees 21:329-335.

Bittel P, Robatzek S. 2007. Microbe-associated molecular patterns (MAMPs) probe plant immunity. Current Opinion in Plant Biology 10:335-341.

Boyko V, Hu Q, Seemanpillai M, Ashby J, Heinlein M. 2007. Validation of microtubule-associated Tobacco mosaic virus RNA movement and involvement of microtubule-aligned particle trafficking. Plant Journal 51:589-603.

Chinchilla D, Zipfel C, Robatzek S, Kemmerling B, Nürnberger T, Jones JDG, Felix G, Boller T. 2007. A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature 448:497-500.

Chinchilla D. Boller T, Robatzek S. 2007. Flagellin signalling in plant immunity. In: Current Topics in Innate Immunity, pp. 358-371.

Drissner D, Kunze G, Callewaert N, Gehrig P, Tamasloukht M, Boller T, Felix G, Amrhein N, Bucher M. 2007. Lyso-phosphatidylcholine is a signal in the arbuscular mycorrhizal symbiosis. Science 318:265-268.

Hofmann C, Sambade A, Heinlein M. 2007. Plasmodesmata and intercellular transport of viral RNA. Biochemical Society Transactions 35:142-145

Hohn T. 2007. Plant virus transmission from the insect point of view. Proceedings of the National Academy of Sciences of the United States of America 104:17905-17906.

Hohn T, Akbergenov R, Pooggin MM. 2007. Production and transport of the silencing signal in trangenic and virus-infected plant systems. In: Waigmann E and Heinlein M , eds, Viral Transport in Plants, Springer, Heidelberg, pp. 127-157.

Martinez-Noel G, Nagaraj VJ, Calo G, Wiemken A, Pontis HG. 2007. Sucrose-regulated expression of a Ca(2+)-dependent protein kinase (TaCDPK1) gene in excised leaves of wheat. Plant Physiology and Biochemistry 45:410-419.

Noreen F, Akbergenov R, Hohn T, Richert-Pöggeler KR. 2007. Distinct expression of endogenous Petunia vein clearing virus and the DNA transposon dTph1 in two Petunia hybrida lines is correlated with differences in histone modification and siRNA production. Plant Journal 50:219-229.

Rajeswaran R, Sukumaran S, Shivaprasad PV, Pooggin MM, Hohn T, and Veluthambi K. 2007. Mungbean yellow mosaic begomovirus AC2 transactivates the viral promoter-driven transgene and causes toxicity in transgenic tobacco plants. Molecular Plant Microbe Interactions,  20:1545-1554.

Redecker D, Raab P, Oehl F, Camacho FJ, Courtecuisse R. 2007. A novel clade of sporocarp-forming glomeromycotan fungi in the Diversisporales lineage. Mycological Progress 6:35-44

Robatzek S, Bittel P, Chinchilla D, Köchner P, Felix G, Shiu SH, Boller T. 2007. Molecular identification and characterization of the tomato flagellin receptor LeFLS2, an orthologue of Arabidopsis FLS2 exhibiting characteristically different perception specificities. Plant Molecular Biology 64:539-47

Sýkorová Z, Wiemken A, Redecker D. 2007. Co-occurring Gentiana verna and Gentiana acaulis and their neighboring plants in two Swiss upper montane meadows harbor distinct arbuscular mycorrhizal fungal communities. Applied and Environmental Microbiology 73:5426-5434

Sýkorová Z, Ineichen K, Wiemken A, Redecker D. 2007. The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment, Mycorrhiza, 18:1-14.

Thiébeauld O, Pooggin MM, Ryabova LA. 2007. Alternative translation strategies in plant viruses. Plant Viruses 1:1-20

Vanderschuren H, Akbergenov R, Pooggin MM, Hohn T, Gruissem W, Zhang P. 2007. Transgenic cassava resistance to African cassava mosaic virus is enhanced by viral DNA-A bidirectional promoter-derived siRNAs. Plant Moleculal Biology 64:549-557.

Vogler H, Akbergenov R, Shivaprasad PV, Dang V, Fasler M, Kwon MO, Zhanybekova S, Hohn T, Heinlein M. 2007. Modification of small RNAs associated with suppression of RNA silencing by tobamovirus replicase protein. Journal of Virology 81:10379-10388.

Waigmann E, Heinlein M. (eds.) 2007. Viral Transport in Plants, Plant Cell Monographs Vol. 7, Springer Berlin-Heidelberg

Waigmann E, Curin M, Heinlein M. 2007. Tobacco mosaic virus ­ a model for macromolecular cell-to-cell spread. In: Viral Transport in Plants (eds. E. Waigmann and M. Heinlein), pp 29-62, Plant Cell Monographs Vol. 7, Springer, Berlin-Heidelberg

Wiemken V. 2007. Trehalose synthesis in ectomycorrhizas - a driving force of carbon gain?. New Phytologist 174: 228-230.

2006

Akbergenov R, Si-Ammour A, Blevins T, Amin I, Kutter C, Vanderschuren H, Zhang P, Gruissem W, Meins F, Hohn T, Pooggin MM. 2006. Molecular characterization of geminivirus-derived small RNAs in different plant species. Nuc Acids Res, 34, 462-471

Ashby J, Boutant E, Seemanpillai M, Groner A, Sambade A, Ritzenthaler C, Heinlein M .2006. Tobacco mosiac virus movement protein functions as a structural microtubule-associated protein. J. Virol., 80, 8329-8344

Blevins T, Rajeswaran R, Shivaprasad PV, Beknazariants D, Si-Ammour A, Park H-S, Vazquez F, Robertson D, Meins F, Hohn T and Pooggin MM. 2006. Multiple plant dicers mediate viral small RNA biogenesis and DNA virus induced gene silencing. Nucleic Acids Research, 34, 6233-6246.

Boutant E, Ritzenthaler C, Heinlein M. 2006. Etude de l'interaction microtubules - protéine de mouvement du virus de la mosaique du tabac. Virologie 10, 455-456

Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. 2006. The Arabidopsis Receptor Kinase FLS2 Binds flg22 and Determines the Specificity of Flagellin Perception. Plant Cell 18, 465-76.

Ferralli J, Ashby J, Fasler M, Boyko V, Heinlein M. 2006. Disruption of microtubule organization and centrosome function by expression of Tobacco mosaic virus movement protein. J. Virol. 80, 5807-5821

Gargantini PR, Gonzalez-Rizzo S, Chinchilla D, Raices M, Giammaria V, Ulloa RM, Frugier F, Crespi MD. 2006. A CDPK isoform participates in the regulation of nodule number in Medicago truncatula. Plant Journal,48, 843-856.

Heinlein M. 2006. TMV movement protein targets cell-cell channels in plants and prokaryotes: possible roles of tubulin- and FtsZ-based cytoskeletons. In: Cell-Cell-Channels (eds. F. Baluska, D. Volkmann, P.W. Barlow), Landes Bioscience, pp. 176-182

Hijri I, Sýkorová Z, Oehl F, Ineichen K, Mäder P, Wiemken A, Redecker D. 2006. Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity. Molecular Ecology 15, 2277-2289.

Hohn B, Hohn T. 2006. Single-stranded DNA plant pathogens in Eilat. Plant Molecular Biology,61, 357-364.

Jansa J, Wiemken A, Frossard E. 2006. The effects of agricultural practices on arbuscular mycorrhizal fungi. In: Frossard E., Blum WEH, Warkentin BP. (eds.) Function of Soils for Human Societies and the Environment. Geological Society, London, Special Publications, 266, 89-115.

Mäder P, Fliessbach A, Dubois D, Gunst L, Jossi W, Widmer F, Oberson A, Frossard E, Oehl F, Wiemken A, Gattinger A, Niggli U. 2006. The DOK experiment (Switzerland). In ISOFAR: Long-term Field Experiments in Organic Farming, Eds. J. Raupp, C. Pekrun, M. Oltmanns and U. Köpke, Verlag Dr. Köster, Berlin, 41-58.

Martinez-Noël G, Tognetti J, Nagaraj V, Wiemken A, Pontis H. 2006. Calcium is essential for fructan synthesis induction mediated by sucrose in wheat. Planta,225, 183-191.

Molinier J, Ries G, Zipfel C, Hohn B. 2006. Transgeneration memory of stress in plants. Nature,442, 1046-1049.

Oehl F, Sýkorová Z, Redecker D, Wiemken A, Sieverding E. 2006. Acaulospora alpina, a new arbuscular mycorrhizal fungal species characteristic for high mountainous and alpine regions of the Swiss Alps. Mycologia 98, 286-294.

Paszkowski U, Jakovleva L, Boller T. 2006. Maize mutants affected at distinct stages of the arbuscular mycorrhizal symbiosis. Plant Journal, 47, 165-173.

Pooggin MM, Ryabova LA, He X, Fütterer J, Hohn T. 2006. Mechanism of ribosomal shunting in rice tungro bacillifom virus. RNA 12 , 841-850

Redecker D. 2006. Evolution of metazoa and fungi. Comment on Rokas et al. (Science 310, 1933-1937). Science 312, 53.

Redecker D. 2006. Molecular ecology of arbuscular mycorrhizal fungi: a review of PCR-based techniques. In : "Molecular Techniques for Soil and Rhizosphere Microorganisms"( J. Cooper, J. R. Rao, eds.) CABI Publishing, Wallingford, Oxfordshire, UK., 198-212.

Redecker D, Raab P. 2006. Phylogeny of the Glomeromycota (arbuscular mycorrhizal fungi): recent developments and new gene markers. Mycologia 98, 885-895.

Ritsema T, Hernandez L, Verhaar A, Altenbach D, Boller T., Wiemken A, Smeekens S. 2006. Developing fructan-synthesizing capability in a plant invertase via mutations in the sucrose-binding box. Plant J., 48, 228-237.

Robatzek R, Chinchilla D, Boller T. 2006. Ligand-induced endocytosis of the pattern recognition receptor FLS2 in Arabidopsis. Genes and Development 20, 537-542.

Ryabova LA, Pooggin MM, Hohn T. 2006. Translation reinitiation and leaky scanning in plant viruses. Virus Research 119 ,52-62.

Seemanpillai M., Elamawi R., Ritzenthaler C., Heinlein M. 2006. Challenging the role of microtubules in Tobacco mosaic virus movement by drug treatments is disputable. J. Virol. 80, 6712-1715

Sieverding E, Oehl F. 2006. Revision of Entrophospora and description of Kuklospora and Intraspora, two new genera in the arbuscular mycorrhizal Glomeromycetes. J. Appl. Bot. & Food Qual. 80, 69-81.

Spain JL, Sieverding E, Oehl F. 2006. Appendicispora: a new genus in the arbuscular mycorrhiza-forming Glomeromycetes, with a discussion of the genus Archaeospora. Mycotaxon 97, 163-182.

Staginnus Ch, Richert-Pöggeler KR. 2006. Endogenous pararetroviruses: two-faced travelers in the plant genome. Trends in Plant Science 11, 485-491.

Thuerig B, Binder A, Boller T, Guyer U, Jimenez S, Rentsch C, Tamm L. 2006. An aqueous extract of the dry mycelium of Penicillium chrysogenum induces resistance in several crops under controlled and field conditions. European Journal of Plant Pathology,114, 185-197.

van der Heijden MGA, Streitwolf-Engel R, Riedl R, Siegrist S, Neudecker A, Ineichen K, Boller T, Wiemken A, Sanders IR. 2006. The mycorrhizal contribution to plant productivity, plant nutrition and soil structure in experimental grassland. New Phytologist 172: 739-752.

Van Riet L, Nagaraj V, Van den Ende W, Clerens S, Wiemken A, Van Laere A. 2006. Purification, cloning and functional characterization of a fructan 6-exohydrolase from wheat (Triticum aestivum L.). J. Exp. Bot. 57, 213-223.

Wiemken V, Boller, T. 2006. Delayed succession from alpine grassland to savannah with upright pine: Limitation by ectomycorrhiza formation. Forest Ecology and Management 237, 492-502.

Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones JDG, Boller T, Felix G. 2006. Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation. Cell 125: 749-760.

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